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popari 0.0.1 documentation
Installation
Usage
Quickstart
Preprocessing Demo
Training Demo
Analysis Demo
Grid Search with MLflow
CLI
API
popari.io.save_anndata
popari.io.load_anndata
popari.model.Popari
popari.model.load_trained_model
popari.components.PopariDataset
popari.tl.preprocess_embeddings
popari.tl.leiden
popari.tl.compute_ari_scores
popari.tl.compute_silhouette_scores
popari.tl.compute_empirical_correlations
popari.tl.propagate_labels
popari.tl.metagene_gsea
popari.tl.find_differential_genes
popari.tl.plot_gene_activations
popari.tl.plot_gene_trajectories
popari.tl.evaluate_classification_task
popari.tl.compute_confusion_matrix
popari.tl.compute_columnwise_autocorrelation
popari.pl.in_situ
popari.pl.all_embeddings
popari.pl.metagene_embedding
popari.pl.multireplicate_heatmap
popari.pl.multigroup_heatmap
popari.pl.confusion_matrix
popari.pl.metagene_signature_enrichment
popari.pl.clusters_to_categories
popari.simulation_framework.SimulationParameters
popari.simulation_framework.SyntheticDataset
popari.simulation_framework.MultiReplicateSyntheticDataset
.rst
.pdf
popari.simulation_framework.SimulationParameters.height
Contents
SimulationParameters.height
popari.simulation_framework.SimulationParameters.height
#
SimulationParameters.
height
:
float
=
1.0
#
Contents
SimulationParameters.height