popari.tl.plot_gene_activations#
- popari.tl.plot_gene_activations(trained_model, gene_subset, level=0)[source]#
Plot metagene activation heatmaps for target genes across all groups.
This type of analysis is only valid for runs of Popari in which
metagene_mode="differential"was used.- Parameters:
trained_model (Popari) – the trained Popari model.
gene_subset (Sequence[str]) – names of genes to plot for.
- Returns:
The names of genes that are differentially expressed with respect to their group.