popari.pl.in_situ

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popari.pl.in_situ#

popari.pl.in_situ(dataset, axes=None, fig=None, color='leiden', **spatial_kwargs)#

Plot a categorical label across all datasets in-situ.

Extends AnnData’s sc.pl.spatial function to plot labels/values across multiple replicates.

Parameters:

  • datasets – list of datasets to process

  • color – the key in the .obs dataframe to plot.

  • axes – A predefined set of matplotlib axes to plot on.

  • dataset (Sequence[PopariDataset])

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