popari.model.Popari.save_results

Popari.save_results(dataset_path, ignore_raw_data=True)

Save datasets and learned Popari parameters to disk.

Parameters:

• dataset_path (str) – where to save results. If results are non-hierarchical, file extension will automatically be changed to .h5ad. Otherwise, if results are hierarchical, dataset_path will be interpreted as a path to a subfolder where separate .h5ad files will be stored for each hierarchical level.

• ignore_raw_data (bool) – if set, only learned parameters and embeddings will be saved; raw gene expression will be ignored.