popari.model.Popari.load_anndata_datasets

popari.model.Popari.load_anndata_datasets#

Popari.load_anndata_datasets(datasets, replicate_names)[source]#

Load Popari data directly from AnnData objects.

Parameters:

  • datasets (Sequence[AnnData]) – spatial transcriptomics datasets in AnnData format (one for each FOV)

  • replicate_names (Sequence[str]) – names for all datasets/replicates

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